NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194134_10003009

Scaffold Ga0194134_10003009


Overview

Basic Information
Taxon OID3300020179 Open in IMG/M
Scaffold IDGa0194134_10003009 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015056 Kigoma Offshore 0m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18835
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (24.39%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-4.8915Long. (o)29.586Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001018Metagenome / Metatranscriptome804Y
F001120Metagenome / Metatranscriptome772Y
F001165Metagenome / Metatranscriptome760Y
F015201Metagenome / Metatranscriptome256Y
F042290Metagenome / Metatranscriptome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0194134_1000300922F042290N/AMTLTYRGCKYDQEQQAKSDREWWNFAHRPWLCLTYRNVCYFPFVTGGQIK
Ga0194134_1000300923F015201GGAGGMNKALIIYLIDKKKKTTRTNVESVRAIKELEKQKSATF
Ga0194134_1000300938F001120N/AMTKKSPINFDRTIAGFNITERGVKSYTKSIKLGPFQVTLNARQSGLHGSISIPGTGLSKRNIKLI
Ga0194134_1000300941F001165N/AMPSFNDAPKPRIPDSIDSQRLQAMQIVAKMKESADKYGVGFVGGFVSPNGEKFVMSNMTDEDTNMLLPEDLQ
Ga0194134_100030097F001018N/AMTQITHTKLKELNVIQLYEHYGALERSLPLLTPESQELAKAELEACVSLRSEKIDRIYYAMASHEDAVERIKKEKVLIFQAQKHHESQVDSLKGLLNYLKRSLPADTTKITGKNYQFTLVKKKDLTVEVKSSVDDWSSEEQQSFCIQEEVTTTKQIVVRSMSGDVLEERTEPTTKTTVLPNLDAIRHAHQTGKALPTGVKVFQEYGIRSKRIYSKSSVELEASEYPGQFLPED
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