NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194134_10003127

Scaffold Ga0194134_10003127


Overview

Basic Information
Taxon OID3300020179 Open in IMG/M
Scaffold IDGa0194134_10003127 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015056 Kigoma Offshore 0m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18357
Total Scaffold Genes38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (39.47%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-4.8915Long. (o)29.586Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010762Metagenome299Y
F036202Metagenome / Metatranscriptome170N
F041151Metagenome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0194134_1000312717F036202N/AMSLKLFDYENRGRYVHQVYDNKQRLSTQSVYRLAGSGNFAETELGDPRFHYSPVSGDHAIGKYDKDGHYCTYLPPIPRPGSKEPVGRYVRHPWAEEERRRQGAMEA
Ga0194134_1000312728F041151N/AMVTPITTAQDLINALIEIKHQKEELEQKEAFLKEQLQGAIAFGELKDYQQEDGIFQFPNAKYIRCERNSYKYSKDAERAMRTIKEQDIDAGLATRNVTTYYQLRTMD
Ga0194134_1000312736F010762GAGMMNELTIKAAFVDWWRESYGIAPGNHAVMTHVAFAAHMLDLMELMQDAERPPA
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