NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194134_10006203

Scaffold Ga0194134_10006203


Overview

Basic Information
Taxon OID3300020179 Open in IMG/M
Scaffold IDGa0194134_10006203 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015056 Kigoma Offshore 0m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10866
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (35.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-4.8915Long. (o)29.586Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005633Metagenome / Metatranscriptome394Y
F006262Metagenome / Metatranscriptome377Y
F010611Metagenome / Metatranscriptome301N
F019637Metagenome / Metatranscriptome228Y

Sequences

Protein IDFamilyRBSSequence
Ga0194134_1000620310F006262N/AVFTFTVSIKRAYLRSVYSALGGATLLDALTSKVIAAASVIESGQVVRSTSSSDVSVEFAEPGKGAPTPSEMVEMWESLIGDYDLAVDLLDQDGISSPTDAEIFDKLMDEVLVAVTSYGGDFSNFRREGTIRTSMT
Ga0194134_1000620313F010611N/AMTQRSYAEHSGLTTGYVTMLVKKGMPMDSIEAADAWRARNIRAKNIRRPTDTIPEEGTAVEQEGPYRPAEASTPIDTATAATDSPEGAYERQRQIERAAYDLAVEALRHRRADAGRLVAIHAAAAKNLTSARDEVTAQAEKERRLVSGDWVKRVMQEHDGAVASLLKAMPKQLSGRIAPHDPEHAERELNRWVQEVALKTLHQTDPWK
Ga0194134_1000620314F019637GGAMPHRHLQFLIDQFGLVTTAWFIRLMKSGTPPEQLAGYCVPDPRDSRRDGVLRALQYAGTVPDSALPENIRTAIRP
Ga0194134_100062037F005633N/AMRIATTISVDRNGKAKIVAGPEVDASLQRSDFNTANVPEGGKLILWIQGALCPKIRKG
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