NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194134_10008834

Scaffold Ga0194134_10008834


Overview

Basic Information
Taxon OID3300020179 Open in IMG/M
Scaffold IDGa0194134_10008834 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015056 Kigoma Offshore 0m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8349
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (45.83%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-4.8915Long. (o)29.586Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034149Metagenome / Metatranscriptome175Y
F067478Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0194134_1000883424F067478GAGGMTATYRGCKYNTHTMKLEYRKWYSQTHAPSHPPNKYRGISYRPCNNWNWEEKK
Ga0194134_100088348F034149GAGGMTLSQGLVIEENEEPGFEILHLSFRKRESSHFYGGPVDYYIGNIVFRLTDSDAKRRMDYYMEKNEELRVAPDLELMEKYYEDLHFKFDEEEEDEKGNKFTKLDIVNKYGIKDEDVFIRAHRRNMAPLHDFIQYNEKFDCYRMHEYFQDTPVVRGIMQYLQDMKDGKPNPSRTLYHEQFINTLENLCWWWD
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