NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194134_10038013

Scaffold Ga0194134_10038013


Overview

Basic Information
Taxon OID3300020179 Open in IMG/M
Scaffold IDGa0194134_10038013 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015056 Kigoma Offshore 0m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2814
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-4.8915Long. (o)29.586Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019290Metagenome230Y
F045612Metagenome152Y
F088510Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0194134_100380134F019290N/AMQGSSFWGTTNIKVAATVAAFGAKLRIENPVTRMVREDNSQQVTFWFVADGAGAREKKEMESNWADMTFDSEHPIRYVRAALENRETLLGLVKRAEPIQIIRMGEQTLIVPLNAPSERKKAILKAI
Ga0194134_100380136F088510AGGAGGMSESEILNEVRLSVARIETRQVHILEVLTDHKAKMDRIESEAHGLKGKVWLISTVVFAVFAAAWEIVKNRLLGHP
Ga0194134_100380137F045612GGAVSAAYTYTDFLAALNWLEAEGYIEKFYDDSGHECVRICEGAEEAEV
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