NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194134_10053590

Scaffold Ga0194134_10053590


Overview

Basic Information
Taxon OID3300020179 Open in IMG/M
Scaffold IDGa0194134_10053590 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015056 Kigoma Offshore 0m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2206
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (58.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-4.8915Long. (o)29.586Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018912Metagenome232Y
F021942Metagenome / Metatranscriptome216N
F050211Metagenome145N
F102547Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0194134_100535901F021942N/AELQRTAGVSLTIYQPKNLANLIKSRRAKQDNKAVIAQFKKARQAQATVN
Ga0194134_1005359011F050211N/AMIKYNNINVYDVYFCLQDDDGNTLEHKNGKPKLFKYKQEINAPFDYIQTITEDTTLDMLEEIK
Ga0194134_100535903F102547AGGAGMLENKKAQFNIIYVPEKINGVENVEKKSVCRSGLLDDKTKIFTTTKGEIAFCYFDVDRNNYRTAKNKWTINIRG
Ga0194134_100535908F018912GAGGMAEKKLITDEMIANYHKAVIKFNEDIKKERKFRQTLCENFISEWADIIEEIGIRNRKELN
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