NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194134_10231828

Scaffold Ga0194134_10231828


Overview

Basic Information
Taxon OID3300020179 Open in IMG/M
Scaffold IDGa0194134_10231828 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015056 Kigoma Offshore 0m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)769
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-4.8915Long. (o)29.586Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003783Metagenome / Metatranscriptome468Y
F046326Metagenome / Metatranscriptome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0194134_102318281F046326AGGAMNKYNSEEYFSVLDKKTGRKLLDCGDELDALAMVAMDPQNRTYTRNQFLMGQVVDV
Ga0194134_102318282F003783N/ANKTLSHYGVKDRTITPTVISTVVSNVPMTRTMSYEKLETLVPYIKSASRQFNIPENVIAAVLYEEILHRKPVDVRTFGVAQLGLKELMTQGLPPRKELLDDDEVSVWLLTSKLRRLQNETGSLRDAIILHNGYYDYYDSVRKTAKDPKVLTLLSQHKHRSTILL
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