NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0206129_10004093

Scaffold Ga0206129_10004093


Overview

Basic Information
Taxon OID3300020182 Open in IMG/M
Scaffold IDGa0206129_10004093 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160502_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16320
Total Scaffold Genes45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (24.44%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045198Metagenome / Metatranscriptome153Y
F045797Metagenome / Metatranscriptome152Y
F067212Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0206129_1000409318F045198AGGMKLEAEHIEAIAMYMADDLEDHLDIVFWDGIARVLDEFDIDYEDIFDISDEDCQAIVSETRILFFNYIKKINYGIN
Ga0206129_100040937F067212N/AMQIHCKSCGKDVTMETEFETRRPYRIINNHKCEVKLARAKAKALESGFIL
Ga0206129_100040939F045797GAGMKTIKTVREDSSIIMSEEIGGVTFYTKWRPYNVGELPKNFGCVEYETEVEGINEWFNYKGYTYVRE
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.