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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020182 Open in IMG/M |
| Scaffold ID | Ga0206129_10013529 Open in IMG/M |
| Source Dataset Name | Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160502_2 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7041 |
| Total Scaffold Genes | 19 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (26.32%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (37.50%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Atlantic Ocean: North Sea, Helgoland | |||||||
| Coordinates | Lat. (o) | 54.1841 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F009330 | Metagenome / Metatranscriptome | 319 | N |
| F009856 | Metagenome / Metatranscriptome | 312 | Y |
| F015079 | Metagenome | 257 | Y |
| F036970 | Metagenome / Metatranscriptome | 169 | Y |
| F048232 | Metagenome | 148 | N |
| F063610 | Metagenome / Metatranscriptome | 129 | Y |
| F063642 | Metagenome | 129 | N |
| F072209 | Metagenome | 121 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0206129_1001352912 | F072209 | N/A | MVRAWFLAELGRLIKFVDATKTIQDDEEMKETARALMEEFPAFKLEEFALVFEGIKRNKFGPMYGRLKLGELMECCRKWEETRAERILERKHRPEHDPYQRHAGTREERKAILLTVEDLIDLGQIKPPE |
| Ga0206129_1001352913 | F009856 | N/A | MKYWFEVEDAQRWGLPAAAVLAHLKYWIERNTSAGEEPCMTQGIKEMAEYLPFLTPSKIKRALVKLEQQEAIYRKPNGFDRRHTYCLGTKPDHAWDESEPSISQNRTIDEPNLARVHIETNTSKRTRENAREELEYQRPTEEEVVEYFRDIGGSDVADQLGQEFHTHYESTGWIVSGTPMAKWKPKARSWLSRMRNKQSNERRKGFNPSGFTPDGLKDFIANG |
| Ga0206129_1001352914 | F048232 | GGA | MSKIVLPYQERVARIMFLREHRRNLLRDYCNDEVTKKEKDKLRQEIARVQKALKELDPDGMFPP |
| Ga0206129_1001352915 | F015079 | N/A | MVQAQIESIQGKGDWKGQHGTMYQFEVAFNDGTVGEANSKSQEPPYKVGDEVYYEVKSDNERWGKKLKISKNPPPPGGFQQFQPANPNKDKQIIRGMCFKVAGMAWANQYKHKSFELPHEVMVKDVITLAKKYEKAFNEWMEE |
| Ga0206129_1001352916 | F036970 | N/A | MTKYKRWVTAVNRAIVAEMAMQKKTQKDLAEALSIHPVTINRKLKDPGLFFVGELGLLCDTLNIDLKNPPNYGTGAN |
| Ga0206129_1001352917 | F063642 | N/A | MEHTVSPLFDEVIQLATPDCINRRDMTLVRKLKNLQEYTVRIEKILEDAKSIIEDHAK |
| Ga0206129_100135297 | F063610 | GAGG | MTKRQILHTKIHEKDGKRYKATTWDCTPVGHEDVYNLSRTEWELIEEPRNQMTLF |
| Ga0206129_100135299 | F009330 | GGA | VTLDGYLSRNYDDLLQAAYRIAGKDGPDLLHEVILQLYQTKQDTIDGLLERDQMKYWVLRVMVNNYNSKTSRYHYKWRKDIERRRKFSRHIVDWWDGDGVAAHRDELLTHIEERLADLPWFDAEVFAIYFEEGHTLDSFAEATGISRHKLYTTIRRVRKEIQGARRQDREVDEGDGNR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |