Scaffold Ga0194115

Basic Information
Taxon OID	3300020183 Open in IMG/M
Scaffold ID	Ga0194115_10000820 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020183 Open in IMG/M

Scaffold ID

Ga0194115_10000820 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	43123
Total Scaffold Genes	64 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	36 (56.25%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (55.56%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

43123

Total Scaffold Genes

64 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

36 (56.25%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (55.56%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location Name	Tanzania: Lake Tanganyika
Coordinates	Lat. (^o)	-6.4446	Long. (^o)	29.9042	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Tanzania: Lake Tanganyika

Coordinates

Lat. (^o)

-6.4446

Long. (^o)

29.9042

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001841	Metagenome / Metatranscriptome	627	Y
F002317	Metagenome / Metatranscriptome	571	Y
F003805	Metagenome / Metatranscriptome	467	Y
F006109	Metagenome	381	Y
F014614	Metagenome / Metatranscriptome	261	Y
F017824	Metagenome	238	N
F027171	Metagenome / Metatranscriptome	195	N
F051901	Metagenome	143	N
F091495	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194115_1000082015	F091495	GAGG	MARRIGTRRQDVRNLATDALQAINTATRQAAVEIMNDLGKLGPAYSGEFRDSWIAVPAGKGASGSAGGEYPYQLSDVPELSLSRREVARVTKFTIENTQPYAEYALDLREGRFYPPDEFGPIKKPVAEGSRAAGLTKRGAVTEGAGEAKSTAELDWYTTYTNGGGLQKALERGVKLGFKP
Ga0194115_1000082040	F001841	AGAAGG	MNTPNFFLGLMRVIAWAFWRDPVAKAEPPQPKRPRKPVLGYTVGDIPFELFAIVRIEWYRKGMAYEVEEYQIEESDDATAQFHYVVGTALKQGADVAVLTQYEPAALGVPE
Ga0194115_1000082042	F027171	AGGAGG	VIIDLDDFSMDADGLVTVTAVVDEMVLTHQQTAFDPPEYGPALCRGTFYLSDEDLIPATDAELCRLFYDRVDDWEVLDPDD
Ga0194115_1000082044	F014614	N/A	MTDWYADYYRQSRGYNWHDLMEMRQQKPRTDLPVPDCFKHQFADRAAYDAWVEQKRRDYF
Ga0194115_1000082053	F006109	AGG	MAGTWWVTAIFGSEGVGVTRSKADASSWATYEQALMAAQTVAARTHSFVAVHSIDEPSYQQK
Ga0194115_1000082054	F017824	N/A	MNPLQWEENRDLKLGEGVSRTSSEKAKLFELQIWLAGQGAMRDLIRAESLQQAIEFAKNRYPNCRIDVPPQAAKKPRLARSKTSPSVVANSRRKLADKK
Ga0194115_1000082055	F051901	GGA	MTVPKINFTKADAEMAKADYLDELFYRDGRDQLSHPLHGTYTGLYQKYTLKQSS
Ga0194115_1000082056	F003805	N/A	MRPIEHTPESSFHKTAQDRWLVDLFNKQDYRGLLEAALVLNTLHQMERTKANWAIREAADNLADQFGLDRDSA
Ga0194115_1000082060	F002317	N/A	MENHDEAVYHAEPPHNPFNQVVPALLTAAVVGLAGLFMQVAKLDQSVNTVAADIQELKNDSKERLSDLESRVRLIEMRVGAYSQNK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0194115_10000820

Overview

Ecosystem & Geography

Associated Families

Sequences