NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194115_10017152

Scaffold Ga0194115_10017152


Overview

Basic Information
Taxon OID3300020183 Open in IMG/M
Scaffold IDGa0194115_10017152 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5935
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-6.4446Long. (o)29.9042Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000710Metagenome / Metatranscriptome925Y
F041161Metagenome / Metatranscriptome160N

Sequences

Protein IDFamilyRBSSequence
Ga0194115_1001715212F041161AGGAMPYKNLAHTLKMMARQVAESVEFADRFLPYHTTPQEIWSILKDNLIYRNDPPGVELLQSFPSLMNDNYWGTPGAGDCDCFTIAALACAAARDIPARVVIVGNNAEAPTHIYCQYLVNGRYIDFDLVSSDYGTTKPYKYRQTLKLH
Ga0194115_100171525F000710N/AMATNMDITYRQGIRSKGFDVTVPTTGTTTTLSLSGLAKSFEGIIVSSTTSAAPGTIINPAQLRLTLTINNDVVIDNDSAFHYAITAPGGFAGGFPFFIPIPRRLTGQDTIQLRITNSSGASQILNVTVWYRNEL
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