NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0194115_10017541

Scaffold Ga0194115_10017541


Overview

Basic Information
Taxon OID3300020183 Open in IMG/M
Scaffold IDGa0194115_10017541 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5831
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-6.4446Long. (o)29.9042Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003643Metagenome / Metatranscriptome475N
F008357Metagenome / Metatranscriptome334Y
F051704Metagenome / Metatranscriptome143Y
F103128Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0194115_100175411F051704N/AMHDHHNMNSELVAGITEMQLMWILMGLMAIHHTWMWWKMRKKCNCKK
Ga0194115_1001754110F008357AGGAGMAGQKNWDVDQDTTFTFVVEYRDPNNAIIDLTGSTAKMQVRDATAQKLAFTLTSPAGGITINGALGKVTVKMTPTQTKKLFYPKSIYDLIIVDSNSNRIKLLGGYINLKRTVTI
Ga0194115_100175412F103128AGAAGMNKLYIDQITRCMNNAKLKYQNYYDDMAMATGALEWMTGYLEKLLENCQNVSEGKCDTWWRHEDCNSLMAILADLTGDEKYTIKPMKANSWD
Ga0194115_100175419F003643AGGAGGMKEDLNQDGKVTMQEKILAALASYGRHFLGAAIALYMTGNTDPGDLIKGGIAACLPVVLKALNPNEASFGFTKKA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.