NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194115_10026015

Scaffold Ga0194115_10026015


Overview

Basic Information
Taxon OID3300020183 Open in IMG/M
Scaffold IDGa0194115_10026015 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4324
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-6.4446Long. (o)29.9042Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024782Metagenome / Metatranscriptome204Y
F060851Metagenome / Metatranscriptome132N
F102699Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0194115_1002601510F060851N/AMIGDMKAVLEFNLPEDQRSFEMANQAADMVAALGHFEDRLRSYIKYGHEFKSANEALEAVRALLHEEINLRRINIYDC
Ga0194115_100260155F024782N/AMIEKSIERLRAFNSWRTGEDDRTMDEAGIVPSIVTKDIQVVCDELEKLMKICSHQDYSS
Ga0194115_100260156F102699AGAAGMNNINNTDADHATFFYLTLHLPKNFNREEARKIRQDLLDFLDSKRHYGAKYDGKAGISVQITSVSTNHD
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