NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194115_10159090

Scaffold Ga0194115_10159090


Overview

Basic Information
Taxon OID3300020183 Open in IMG/M
Scaffold IDGa0194115_10159090 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1165
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-6.4446Long. (o)29.9042Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020144Metagenome / Metatranscriptome225Y
F056403Metagenome / Metatranscriptome137Y
F091309Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0194115_101590901F056403N/ALEIGSKWKHKTSNDVYVVVEQYSHRVVLKHEPTGETIKVTIGHLNPQGFDEYRAL
Ga0194115_101590903F020144N/AMSNFYTLLPGTDVLRSKIDVFTWTNPADENETERVELTVDNAGIFITSCSGGAREDMSIAQKDLAIALARGILEAYGEV
Ga0194115_101590904F091309GGAGMRNPYELNKEAPAFSYTRAELFNTIMNIVAHPHNAITEHDKARTAAIFLVIGDYLDNHTESDNNGGHVIYEKDETDFEGYVLELLNYPELTYGDLSAKELLK
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