NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181573_10246430

Scaffold Ga0181573_10246430


Overview

Basic Information
Taxon OID3300020184 Open in IMG/M
Scaffold IDGa0181573_10246430 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101409BT metaG (spades assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)918
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: Euk_MAG)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015595Metagenome / Metatranscriptome253Y

Sequences

Protein IDFamilyRBSSequence
Ga0181573_102464302F015595GGAGVGLFGDMRQMGLSGASPLGEVKTKAPNSDYHNHRDAPPAAARQAEVARDYLKRAARIDELNGHPPGSDGPIANALKRYNGGRVLVLVVGAFAEMSEDVSRICDIIAHDLARTHVSYYNDDTKRIKGMYRQRIQKAWGRTAHRGWARLLLNRARDPVIHDPAHRGANGAAMPTDEEDQDGHFFFNHPERGDYPAA
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Institute for Fundamental Biomedical Research
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