NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206131_10000275

Scaffold Ga0206131_10000275


Overview

Basic Information
Taxon OID3300020185 Open in IMG/M
Scaffold IDGa0206131_10000275 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)74298
Total Scaffold Genes84 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (26.19%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014724Metagenome / Metatranscriptome260Y
F032304Metagenome / Metatranscriptome180Y
F064621Metagenome128Y
F091851Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0206131_100002756F091851GGAGMKIYTYYQNINHPSQNELIDLWKISWSRQGYEPIVLNLEDAKKHPYFETLNTEMRRIFKEITNKKISDYGMSCWFRWLAYATQADEKFYVSDYDAINLNFPITEPNDKLHLMDGACPFLASGTPAQFENLCKGFVEISNERIEILKEQANHYHDQEFFAYNIERRKGPSAEECKNKLGMLVTRERFEIGGFIDPVLNKVVPGPNYKPIEDKEYGVIHVSHYNIDILQKKYDQYKNLDPSQLRIDFVKKFLGNI
Ga0206131_1000027565F064621N/AMINKKIEKFIQDNDLVRVLASPMSETFDLWECPGGHVWTFEMIEQAIK
Ga0206131_1000027570F032304N/AMKHSESGTRKVLKQLRKCPDIQEIRETASGHMILAKNGQQYLAHLSARAFHPLRRWLKKNTRLQALKF
Ga0206131_1000027584F014724N/AELKAIKHSIDGLSDEMLEHRRHANMEDLVKVMKSIDESLCSIRFGIKDLVEAKKFQNELTTALR
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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