NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206131_10000660

Scaffold Ga0206131_10000660


Overview

Basic Information
Taxon OID3300020185 Open in IMG/M
Scaffold IDGa0206131_10000660 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)46662
Total Scaffold Genes76 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)70 (92.11%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006939Metagenome / Metatranscriptome361N
F012352Metagenome / Metatranscriptome281N
F045197Metagenome153N
F048361Metagenome / Metatranscriptome148N
F071405Metagenome / Metatranscriptome122N

Sequences

Protein IDFamilyRBSSequence
Ga0206131_1000066034F071405AGGAMHPSYLGWQIDWPVFVKRPFTSDGKQWETQDHYNWLNRGIGSDAVASLYVQGFIHHNRELEKQAKVGDRLSELTGPQLDKLIGLLNAEVKANTNSNTEYTEKKVKQSKIDAKQRALLRSYLRNNRWIEDKFFEIRDGILED
Ga0206131_1000066036F012352AGGMSFRPYDLLNLVNRFGEPLTLNKVTTSGTYNPANGTVTGSATTDYSFTGYFYNYDNGIAGNIDEIRRGTRKCLISASSLAVVPDDEDQITGNGDTVNVLSVVTIFSNGIAICYICDVRE
Ga0206131_1000066050F048361GGAVTRGDELWVMNKNISASLMFALVVQAAMIVWAISQMRADVDANYASIVRISADVKAVETSSITQAVQLGKIEENIKGIKESLERMLEVMERD
Ga0206131_1000066058F045197AGAAGMGKGIYEGEAMIYVYIVVLSIMKDGEPHFSVRAPNATYKTEERCQAVRELNMLYLLETKPDPKAKFFSQCVGLPFNMKDKGDL
Ga0206131_100006609F006939AGGAGMALPMNMVANVLGENQNNFVTVKFLTKDDEVRVYNGRMNVVKGLKGNERGQIVATALKANGYVTLKTSEGYKCFKLDRVLAFKADGRHVFTMGEEIV
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