NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206131_10001429

Scaffold Ga0206131_10001429


Overview

Basic Information
Taxon OID3300020185 Open in IMG/M
Scaffold IDGa0206131_10001429 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30744
Total Scaffold Genes60 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (18.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004657Metagenome / Metatranscriptome429Y
F016669Metagenome / Metatranscriptome245Y
F028483Metagenome191Y
F056618Metagenome / Metatranscriptome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0206131_1000142928F028483N/AMTKNTSYKVQVDVDTDAIRNQYNIEEGAYVTTESGVWTVYNGEWVKLYPQAGVGTGLGWTRYDDDQYTSDSKLSLADSVEITLPNNAANTYRSYPSIDYYNGTTKRVLADNLNDVYILTIAFKCSAENANQTYIRLQLDAENGTPYERVGVDISFPKGNDVAHEFHQVFQYYADQNFVDNGSFVKITPTGGTAKIWDIIYFIQKTQSYA
Ga0206131_1000142937F004657N/AMANEISWGKIYESSWFGEVNADNGWGIAYPSDADGSTFRADTTLVLADTNQYTADQTQY
Ga0206131_1000142941F016669N/AMDNKISFISGFMFTTLSTITLMGVAQAAMIGLVGGFFGLLGKELYYFIKTKIKKKL
Ga0206131_100014297F056618N/AMKKEPYRITIEQYQYKYSVEVDHSDIDFTEYVELLRQLTLAAGWGTDAVKEFFDE
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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