NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206131_10003521

Scaffold Ga0206131_10003521


Overview

Basic Information
Taxon OID3300020185 Open in IMG/M
Scaffold IDGa0206131_10003521 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17948
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (18.92%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053390Metagenome141Y
F069052Metagenome / Metatranscriptome124Y
F095747Metagenome105N

Sequences

Protein IDFamilyRBSSequence
Ga0206131_1000352112F053390N/AMNLKEQLSEKIKTRDEARKLILDPYIDQIKIVGLTKGLKKLEKEINILIKQIENEES
Ga0206131_1000352115F095747GGAMTEREKNASDKAQQLISRHIRECGIDEDASKKASLILIDELFKWGLPYTYQIEFWTEVKRYLS
Ga0206131_100035218F069052N/AMSYEWIIEKDIQEWEVKEAYNKYLKAKKSFNDYDEYNRWFEYWFDYLHIRNKFINRYEK
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Institute for Fundamental Biomedical Research
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