NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206131_10004569

Scaffold Ga0206131_10004569


Overview

Basic Information
Taxon OID3300020185 Open in IMG/M
Scaffold IDGa0206131_10004569 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15070
Total Scaffold Genes40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (22.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000126Metagenome / Metatranscriptome2021Y
F004103Metagenome453Y
F007611Metagenome / Metatranscriptome348Y
F042015Metagenome / Metatranscriptome159Y
F053300Metagenome / Metatranscriptome141N

Sequences

Protein IDFamilyRBSSequence
Ga0206131_1000456912F042015N/AMKIDKVRAHREELKRILFSVPTEGRKVVKTITVTMMTNKHWKGYGNVSIDSDGPDGFVHFGTSQKNPMEYVLNSKEYKSGEYQLIVK
Ga0206131_1000456913F000126N/AMRDFSITKKKGEWYNAKVIDSYGNKYQNYFETASEANDWIYYIWEKEEWFNSVNSQELLYKAIENCKRLDKNINVREI
Ga0206131_1000456917F053300N/AMKEIDQMLNQWIHNSIIRAKLRELIVKENFKSFDLGVEDGKQTK
Ga0206131_1000456918F007611N/AMKKKWITVLDYETSRVYQYQVTINKHAEDYIVFKGHRLSNVEWMEHQFHAVITK
Ga0206131_1000456924F004103AGCAGMKLIDKVKPEVLDALAQSKINYSSSYRSIIASLSSTDRYRQLSIDQVDQLITFLPNELHPNGRADFYYGDYLLQEKHQL
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