NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206131_10006330

Scaffold Ga0206131_10006330


Overview

Basic Information
Taxon OID3300020185 Open in IMG/M
Scaffold IDGa0206131_10006330 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12160
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (12.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000352Metagenome / Metatranscriptome1247Y
F005454Metagenome / Metatranscriptome400Y
F010928Metagenome / Metatranscriptome297N

Sequences

Protein IDFamilyRBSSequence
Ga0206131_1000633010F005454N/AMRIIKHFNPHFPERETYKCTVRYMTKFGTLDEVTKWRDDQMENEAEYKRIEELSQKRAGAYYKTLTYKGD
Ga0206131_1000633016F010928N/AMETQRFMGSGQLVDRLTAQVRDRGFAIALLKKRGDMTADGKLTAKGESRNRMTAEERALDRAGETSASATYNPETNRVTKNT
Ga0206131_100063302F000352N/AMRNIKLTENDCTFVHYVLRMYAQQTPGLDQEDKEEIREVAAKFK
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Institute for Fundamental Biomedical Research
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