NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206131_10013899

Scaffold Ga0206131_10013899


Overview

Basic Information
Taxon OID3300020185 Open in IMG/M
Scaffold IDGa0206131_10013899 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7142
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (11.11%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036312Metagenome170Y
F059442Metagenome134Y
F076108Metagenome118N
F079336Metagenome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0206131_1001389911F079336N/AMETILRTELETADKRIIVLESTIETYKRIVSALDERIELMEKSHKFELENYYTKNK
Ga0206131_1001389913F059442N/AMRKEDRFKPYIYKVYNSRGNLEEYSRYYYTKKEAVDWYNTQGKWLEKHFNRELILIDTDINLFTYVPSTLLNR
Ga0206131_100138996F076108N/AMTRIELSDNEIEYSTYFPIADPHDIMYSFEEMVRMYTKADIEVDNYIIERAKEIKIKNSN
Ga0206131_100138999F036312N/AMKRKLTHSLCEMQKVNTDLYEVFTTDFWDNGTHTIKDISHHATEREAIEQKLINKHKNLN
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