NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206131_10075549

Scaffold Ga0206131_10075549


Overview

Basic Information
Taxon OID3300020185 Open in IMG/M
Scaffold IDGa0206131_10075549 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2064
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001656Metagenome / Metatranscriptome656Y
F025320Metagenome / Metatranscriptome202Y

Sequences

Protein IDFamilyRBSSequence
Ga0206131_100755492F001656AGGAGMPITQNRSTDLTRRQAFNGKGLTFVEVIFDDAISASATTPEALDSAFDKTTKVINKNGTLLAASYRLAAKATDNDATEVAAIDADDSIDSYQFIVEGTPGQFNNADSAGDINMDVDATVIGDAESDLESDILASLDISDSAGNVHVKIRTLLPEGVTSSGDDAIYGMFDQRGDA
Ga0206131_100755493F025320AGGAGGMTTKVNPTKANTVDHFNGKTVTAVTVDFAVDGTDFSDTEMGALGAVQEAILTLSNQATPIIMTKLRTDGSNAGQVFDVIYEGEFGTDTYDGSNSETFAAYLQTELRLLTAAGSNDIDLSSATVVAGTAVNFS
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