Basic Information | |
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Taxon OID | 3300020185 Open in IMG/M |
Scaffold ID | Ga0206131_10079510 Open in IMG/M |
Source Dataset Name | Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1987 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (25.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea |
Source Dataset Sampling Location | ||||||||
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Location Name | Atlantic Ocean: North Sea, Helgoland | |||||||
Coordinates | Lat. (o) | 54.1841 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F006331 | Metagenome / Metatranscriptome | 376 | N |
F047385 | Metagenome / Metatranscriptome | 150 | Y |
F071009 | Metagenome | 122 | N |
F086945 | Metagenome | 110 | N |
F090089 | Metagenome | 108 | N |
Protein ID | Family | RBS | Sequence |
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Ga0206131_100795103 | F047385 | N/A | MKIEQPSDNSLYVTIGNFTYYFDDSIDGENIVARWHLDDEETDTKEDLQIDDKLIAK |
Ga0206131_100795104 | F090089 | N/A | MSVTYYLTDHNGNQIAFFYRVDNERYNTCPSILWACRQYPQFQGTASSKGDFIEQAKQTLKEIKKLSVPVRKVCKDCDISLQGMENEGTTCDEHNFNR |
Ga0206131_100795105 | F071009 | N/A | MTTDPENLPSLDDASLDALIQHYLSLKQKLTDNLRVRERLVELQDEQLKRQIESLGNYEPIGDDIKDRLNNQ |
Ga0206131_100795107 | F086945 | N/A | MSFDINEEITDCPFDWSGIDHRAISDGWYHFWGETQITSFETDKKGKYVRDEDGKLIAHRTKIPRKLPRTWFNKQQEGQEY |
Ga0206131_100795108 | F006331 | AGAAGG | MTEEKKTKGKAWRMREWGRTQYRNRQAKLRMDGESSKTEASKRMLRVMAPKLGKKVDDFMDTFGGSTEHTTPLFLTFVLDMCPYQIASLALQTFLDNLQFNLPVGRMAYKIGKAFENQARWD |
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