NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181605_10007583

Scaffold Ga0181605_10007583


Overview

Basic Information
Taxon OID3300020188 Open in IMG/M
Scaffold IDGa0181605_10007583 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041411US metaG (spades assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7887
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (57.14%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058190Metagenome / Metatranscriptome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0181605_1000758314F058190N/AMKINHNKIALGILGLVMIAFAAVLFTAPAKAETLEDRVAKLEKNVPNLPTGFFVNGEVEGYYDDKTYDSGWDSRGELQLGIETDLPENSLNINWAGASMVYDTHYSLDTSLNNTVQEKQIGVGNDTARIYFGETDAQRMGFAKTPKISAPLIFTETNYRIDHREKTVITFGGWEYDNEFDFDSYRIKRDKPWGVALGWDNDGNVGYYTGTINLMGLADVSYMRIDGVEDAGTKDQEGYAVGGSLHRFGVPMLWGVELWDDGN
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