Scaffold Ga0181604_10189647

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0181604_10189647

Scaffold Ga0181604_10189647

Overview

Basic Information
Taxon OID	3300020191 Open in IMG/M
Scaffold ID	Ga0181604_10189647 Open in IMG/M
Source Dataset Name	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041410US metaG (spades assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1006
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Gammaproteobacteria virus GOV_bin_2604	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	31.972	Long. (^o)	-81.028	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005019	Metagenome	415	Y
F040332	Metagenome	162	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181604_101896473	F005019	GGAG	VNMYGDIRTCIKCKNKADVVEKGKDYCASCWFRYFSGETVEQYEKRINELEQARKNKK
Ga0181604_101896474	F040332	N/A	EPTESKVLETPLFHKSQENLEKQSLKQKMYRTPTSMDTNEDSMIYAAKILKGKVNRSSNQRVQITLSTDVAMEYLKNNPELIDQFDKPFMYRPNLPDKFKFIEYLKSQTTIKELVNNTDIAKTKIEHWFRKDNCFSYPSINDWNKIKPLLKDIKFDKELTYEIEKDWREIE

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