NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181604_10209157

Scaffold Ga0181604_10209157


Overview

Basic Information
Taxon OID3300020191 Open in IMG/M
Scaffold IDGa0181604_10209157 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041410US metaG (spades assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)941
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000849Metagenome861Y
F004280Metagenome445Y

Sequences

Protein IDFamilyRBSSequence
Ga0181604_102091571F004280N/AMNRRSFIKGLIALASAPAIGKYVNVFKTEGARKGIENVASQGVDFFNSVIKKVMDEGNLVNESDRIQTYKHPDRPDINVEVDLTSGSSSVYFDTDQGTKAGAEIVKDIEMGPNYSELLENEEVYKTGAGGEVYKDVDEQITGGITNLEKFLK
Ga0181604_102091572F000849N/AAARDLGRGRVRSTLGISGAIRPILTTFGTPLMTGLYEGAIGAKRLEEGETMTDILTDPVGPALGLSLMEPLSKLSGVVKDAPKRTMLEGARNYFNLSNVGQARPGITGQILRMGMSPRMIAGASRFLGLPGVALGLGMAGYDAYKDYQNQEGMIYNLFNRDE
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