NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194131_10011673

Scaffold Ga0194131_10011673


Overview

Basic Information
Taxon OID3300020193 Open in IMG/M
Scaffold IDGa0194131_10011673 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015053 Kigoma Offshore 120m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10419
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (58.82%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-4.8915Long. (o)29.586Alt. (m)Depth (m)120
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000345Metagenome / Metatranscriptome1253Y
F023809Metagenome / Metatranscriptome208Y
F072274Metagenome / Metatranscriptome121Y
F099175Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0194131_1001167332F072274N/AMEEQIDGYISPDRMWAAVPYGKKYITIYNGEQICLHNTLETAKKFIQKNKKKGK
Ga0194131_1001167334F099175N/AKKEQIEELKQFAEYLGVDFEDYLEYLHPDVDFDDYSR
Ga0194131_100116734F000345GGAMTEEQSKQPNDFGKAMQEWWDSDACKELQKSHKEAKERAVGKYFMLSEEDKLDMVEAICYIMCKSEKRGTSHRGLMDDLGIYPAGFWVDNLMDVHNALWTYYHDKKQEEELKQDIETLQNFTET
Ga0194131_100116736F023809N/AMDTIQFLAPILGGLCFSNFMEKQGELCNVRQEPAPIVKYYEAGKSCYKNGIFYEKCENSPGVIY
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