NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194128_10141896

Scaffold Ga0194128_10141896


Overview

Basic Information
Taxon OID3300020197 Open in IMG/M
Scaffold IDGa0194128_10141896 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015037 Kigoma Deep Cast 65m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1386
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-4.9054Long. (o)29.4853Alt. (m)Depth (m)65
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014154Metagenome / Metatranscriptome265Y
F043442Metagenome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0194128_101418962F043442N/AMKIYFNANNKAHMESLKACKVKNVVLSFKYSYANISKFRDRFDKIFVVAGTGTNPERYHDLLKKHRNMYDHAIQYDVLYNMNETLKHYQKEKEMGIDWTIPVLGEIHGREETEDQIRKLPANLKYHGLAKGRFLTRTKAFESLDTSGWISAAMTKKCEVWHNNSTNFMFFGEKGKSMIPMLNHACEIHKEFLELINLRKQDLLDAKYDALLKAPFALLYMPMCRQLNILEQNFNI
Ga0194128_101418963F014154N/AMTDDLFKIKPLDEHASKVVVDGRKTVSPFNSIKHLKAANIPALCDQCVYRSVDSGGNGKCPKYEAGAICAIRKDFIALINELDTRNPEHVKTMLDMLAKLSFENVL
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