NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0179592_10000380

Scaffold Ga0179592_10000380


Overview

Basic Information
Taxon OID3300020199 Open in IMG/M
Scaffold IDGa0179592_10000380 Open in IMG/M
Source Dataset NameVadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17574
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (70.83%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000188Metagenome / Metatranscriptome1692Y
F000536Metagenome / Metatranscriptome1044Y
F004677Metagenome / Metatranscriptome428Y

Sequences

Protein IDFamilyRBSSequence
Ga0179592_1000038010F000536AGAAGVPALLPQVTSMVELSPKQMQVIEMLFEAGFRPIAIPPYESALCMRKGDCAAVLAPVPNGGIKLLAPPSYLLEGNLSVKLKRGSVEVFVWKKKEVEATPEKLGELESFRRELTELLGRPPK
Ga0179592_100003804F000188GGAGGMSVKPELAFDVCWEVYRGAREVLETKRGISALNWKDTGKFLWRPDFRPRMNEWVGDFALAGEAALDGPDWVSRMVLFRLYYLGLAAYENARHFLGSSEPSWVNWTEQIRHRVGKELLSRGMFPPRKYFTSS
Ga0179592_100003807F004677AGGAGGLNYYKTQPPWEFLLSASRNSLQSYELSRLSHAANLRKEIGALLDLWMDENSAAMLARWLMEQRERPQQGQEDVSSAESLPRSGHAVSDNFFADRSTTPPANRGPA
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Institute for Fundamental Biomedical Research
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