NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0179592_10002595

Scaffold Ga0179592_10002595


Overview

Basic Information
Taxon OID3300020199 Open in IMG/M
Scaffold IDGa0179592_10002595 Open in IMG/M
Source Dataset NameVadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7531
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001456Metagenome / Metatranscriptome691Y
F054328Metagenome / Metatranscriptome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0179592_100025953F001456GAGMNATSNPAISQPEGFGQRLRHLAIGTLFALALLIPKILHVRRNPRSWMLLRIFLGVAGAALVVLPLGLGASFVPAIVGLAMFVTAILLPPAKLGTDADDKARELAALVVVNGGRYQQGSAPPAAAQLFVGVEHVFVLDRRFQPLLEIPVSEITAACAEEFDESWRLRVTWARHAAEFSYAGIFAEHLARVAETTIRRVMRPALPVLPQRRAAGA
Ga0179592_100025957F054328AGGTGGMVRQIILAGFVVFLPAGLGAQGRGAMPSVSRAVTVAPRAVMPAPHAMTPQAVAGTPAVMSGGALRPKTAVPGVRGRRPQLTTRRRIDDQSIGLRSDCSSAPGLGFDAVHLAATCGSGVLGFGPRGFRNPFFFPFFDGGLFVPSSPVAVDEGPAAETPQPETTDAEAGETRRRYRAPEPATAPAAETASAAPPDNEEFVFVRRDGTVFFAVAYSWEKGTLHYITSQGLPRTTTEDTLDLDATRQFNEQRGLSFRLPV
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