NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0179592_10094774

Scaffold Ga0179592_10094774


Overview

Basic Information
Taxon OID3300020199 Open in IMG/M
Scaffold IDGa0179592_10094774 Open in IMG/M
Source Dataset NameVadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1370
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000703Metagenome / Metatranscriptome928Y
F015771Metagenome / Metatranscriptome252Y
F018787Metagenome / Metatranscriptome233Y

Sequences

Protein IDFamilyRBSSequence
Ga0179592_100947741F015771N/ASAARPGLFYFAESDTTPAFGAPRVYFMGASRNLYVQLGNQTLYWRAYSQYIGSLPSAPVSFGAPPIAVAGGGAAGPAPLPSSGSGVFPNGVPRGGNGFGIHPGARIVRQTVL
Ga0179592_100947742F000703GAGMRCLGGKKSGSKLPHSKFVEQPGLALMQIREYQESDLAALRATHAAQGFDYALPDLRNPLFVTKLVLTQDAASSVVGAQHAAPLLQPTLTGAVPMKRTSRDAEVTAPPGKIIGAALLRLTAEAYLLLDPRAGTPRERWQWLLALHAAAEREAWQRGLEDVHAWLPPPIAGKFGKRLARLGWLRDDAWTPYCKKLSSL
Ga0179592_100947743F018787GAGGMGRGAQSQTRQLTDQQLASLNSLNQQFLGQQQQLGSTLIPQFQSIL
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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