NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196964_10222421

Scaffold Ga0196964_10222421


Overview

Basic Information
Taxon OID3300020202 Open in IMG/M
Scaffold IDGa0196964_10222421 Open in IMG/M
Source Dataset NameSoil microbial communities from Anza Borrego desert, Southern California, United States - S1_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)878
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Desert → Soil → Systems Level Insights Into Methane Cycling In Arid And Semi-Arid Ecosystems

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.3049Long. (o)-116.2547Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F056041Metagenome138Y
F092677Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0196964_102224211F056041GGAGGMAVKGEEVASAIDAQVRESIERMVAEIRSSIEDVRSAVDSQLKAALQSVQADVNSVAFLPQIRKAVDELEASYQAELQAIPAPAGAGAGRVKAAIQAIERGKSQVDVLN
Ga0196964_102224212F092677N/AMRFSTVPATLLLLLAAACADRNVQPDHQAEWRDVLRHKKAAAAPGARPEQKQLYADSVRAFVERHPEHSRAREVWQRLQLEFADDLAAAGRHQDSIRFYRAVLAQDPRNEHASRGLATAVERLAVTREKLLTLERGMSHRHVASILGKPMPGWSVKNKRPEATFEAWYYR
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