NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211731_10168337

Scaffold Ga0211731_10168337


Overview

Basic Information
Taxon OID3300020205 Open in IMG/M
Scaffold IDGa0211731_10168337 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9102
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (76.92%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000473Metagenome / Metatranscriptome1097Y
F007921Metagenome / Metatranscriptome342Y
F016396Metagenome / Metatranscriptome247Y
F026561Metagenome / Metatranscriptome197Y

Sequences

Protein IDFamilyRBSSequence
Ga0211731_101683371F007921GAGMIDWLANKLFWWTPLRDAIFDEVKIYQSIDRSMWEHEKNRPTNLTWAEGDRWYGWTYNPELKRYYFNDIGSESLMSLWEEQWSKEN
Ga0211731_1016833719F016396GAGMRKSERLRLLEMQVVRLEMLVELYTLSIENLLESQNLKPNELDAGKWYQKRLNGLK
Ga0211731_1016833725F000473AGAAGMENNHFKYGVNEWTGEPNKPVFYTQEMAKKIKEIPSPGMLLMDIVKYPDFLAIRLYEDNFIQFDGSAKERVIDYVGKVKKLIESFGVRCELEGQPSAGIL
Ga0211731_101683378F026561AGGAMSMDGTGMTPPPASGAAGAVTSQDATRRNPKQNLRSGMKVDRNRHGIRRETSLTPKPPKKTGRKKV
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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