NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211731_10601549

Scaffold Ga0211731_10601549


Overview

Basic Information
Taxon OID3300020205 Open in IMG/M
Scaffold IDGa0211731_10601549 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6889
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (84.62%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007222Metagenome / Metatranscriptome355Y
F015073Metagenome / Metatranscriptome257Y
F085385Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0211731_1060154910F085385GGAGMYTFQEVAMWMLLGVAIGFISGYTAGLKEGKREGFIRGKIAARKKMEIR
Ga0211731_1060154911F015073GGAGMGFLDNYETVNMKVKRLHSTFPTNRIETSIIDWQPEKGFILIECRIYRHYEDEKPAAIDFAHGMVDAYNAQMKRWYVEDTVSSAIGRCASVVLGTDEKPSRENMEQVEHLPKAFVDEDPWSKPIWEEGFTTAKTAVEEIQSKLGGEIEAESPICAHGHMIRRDSKPDAPKAWAGYFCTEKAKASQCTPIWLVLGSDGKWKQKI
Ga0211731_106015492F007222GGAGMANKAGRGTFAITVDPVEFRNLIGLLNTLDKEAQQEIRDGAYPLSQRLAGQLTMFSQSAPAPQTKLVAQTITAKRDRLIRVDIGGSKKVGRKYGGEQSKSGKGAKVRQQAAPAGALLWGTEFGSHKGVDSLGRPYTDRFKAPSNKRGYWITPAVDYYVPIVAREYAEMVQTVVKKLGLD
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