NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211731_10632234

Scaffold Ga0211731_10632234


Overview

Basic Information
Taxon OID3300020205 Open in IMG/M
Scaffold IDGa0211731_10632234 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12337
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (55.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019829Metagenome227Y
F047675Metagenome149Y
F082693Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0211731_1063223417F047675AGGMKYTILSPRIGTPGDEYEPVDGVNVDALVAGGFIEQSTVKAPKGAKTKTDTNEE
Ga0211731_106322344F082693N/AMAEIDERITIRLTGADCLERDRLYREREQQVKARNSRDTFTSAYTPKAGYTGITAEYAFAKWFGIELVNNQYDPFAADVLGYQIKATERYNGCLIKQPHNPAGLYVLGVVLNDYTEVSFRGWKDSSEVQRACYWRADVPKPGYFVPQAALWALSDLPETNELFTHRTTGVW
Ga0211731_106322345F019829N/AMTEYPIPDPGLTESTRHMYTEKYAETFKSFVDEVLLNKPPARKPVDHSILLDELALLKEKYLNGTPSDEHKFAAAVITAAMAVIIGI
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