NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181570_10164346

Scaffold Ga0181570_10164346


Overview

Basic Information
Taxon OID3300020207 Open in IMG/M
Scaffold IDGa0181570_10164346 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101406AT metaG (spades assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1203
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013173Metagenome / Metatranscriptome273N
F013967Metagenome / Metatranscriptome266Y

Sequences

Protein IDFamilyRBSSequence
Ga0181570_101643461F013967N/AVVYDANTEDELNETITFDITNANPNTFTGGLNGNELAIWNAWNSWPHNNWNLGNYFDGTGRYNEFPLDVPVSFNNVRMFEVIVDAMDDWINDTYSIVTGEEDDMDEADGQLWRAGSPLASVLSVLNPICWTFRLKGTEGTAINQKSRNLVFMTDNATSMEDVWQKLESSIKANSDNDGPDPRLVINPYWGVRPA
Ga0181570_101643462F013173AGGAMAANGISTLSTKQARQVAKLELAQAKRKGRVITEGSGTWSDNGVDDPTANYARANSMYDLTALPTNYNGNAVTDIPNTGGLKLKRPWVTAQVIAEPETLSDAVIGGGGDLTELQIWYDAADKATVIPNATDESQITQWTDKSRFAHNANPDGGSAKPTYEDTTPQNGYGYIEFDGVDDRLTINPFAQLAGATGWTMFVVAQK
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