Scaffold Ga0212168_1407365

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0212168_1407365

Scaffold Ga0212168_1407365

Overview

Basic Information
Taxon OID	3300020231 Open in IMG/M
Scaffold ID	Ga0212168_1407365 Open in IMG/M
Source Dataset Name	Deep-sea sediment microbial communities from the Mariana Trench, Pacific Ocean - CR04
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	JGI facility at Oak Ridge National Laboratory
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1240
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Sediment → Deep-Sea Sediment Microbial Communities From The Pacific Ocean Trenches

Source Dataset Sampling Location
Location Name	Mariana Trench, Pacific Ocean
Coordinates	Lat. (^o)	12.47649	Long. (^o)	144.86485	Alt. (m)		Depth (m)	7939
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013764	Metagenome	268	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212168_14073652	F013764	N/A	MMMSTPSFFFFRTNSKTNSTLPPYSKRVIVAVIVVLPVAFGLNMPLNSMMPFMPVWGVIMINALVIPSYMTFIIPKTSKLLSSWLNPTTVKGAN

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