Scaffold Ga0212226_122098

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0212226_122098

Scaffold Ga0212226_122098

Overview

Basic Information
Taxon OID	3300020232 Open in IMG/M
Scaffold ID	Ga0212226_122098 Open in IMG/M
Source Dataset Name	Deep-sea sediment microbial communities from the Mariana Trench, Pacific Ocean - CR05
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	JGI facility at Oak Ridge National Laboratory
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1992
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Sediment → Deep-Sea Sediment Microbial Communities From The Pacific Ocean Trenches

Source Dataset Sampling Location
Location Name	Mariana Trench, Pacific Ocean
Coordinates	Lat. (^o)	11.54708	Long. (^o)	144.55847	Alt. (m)		Depth (m)	7942
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013096	Metagenome / Metatranscriptome	274	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212226_1220981	F013096	N/A	MTVIEVVTGGDSAVGLSTLSHTNAVALYVPDASGIQDNAGLNDCPAVNEPVIHASETVTPLLSWTCTKYA

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