NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212228_1296767

Scaffold Ga0212228_1296767


Overview

Basic Information
Taxon OID3300020235 Open in IMG/M
Scaffold IDGa0212228_1296767 Open in IMG/M
Source Dataset NameDeep-sea sediment microbial communities from the Kermadec Trench, Pacific Ocean - N075
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJGI facility at Oak Ridge National Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2539
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Sediment → Deep-Sea Sediment Microbial Communities From The Pacific Ocean Trenches

Source Dataset Sampling Location
Location NameKermadec Trench, Pacific Ocean
CoordinatesLat. (o)-32.85037333Long. (o)-177.65414Alt. (m)Depth (m)9177
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048324Metagenome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0212228_12967672F048324GGAMRKHIAAVLTLMLVGACEPQPTSIDDIDFKKLEGMQAVCAKRAASAAIESFSEDTGWTDLMSVESAADAVAAITDATQLELQSCITDIYLMGIEDGRVLEREVY

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