NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211492_1000001

Scaffold Ga0211492_1000001


Overview

Basic Information
Taxon OID3300020238 Open in IMG/M
Scaffold IDGa0211492_1000001 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B000000475 (ERX556004-ERR599068)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)70897
Total Scaffold Genes112 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)85 (75.89%)
Novel Protein Genes10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Associated Families10

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_066
CoordinatesLat. (o)-34.8986Long. (o)18.03Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004630Metagenome / Metatranscriptome430Y
F007946Metagenome / Metatranscriptome342Y
F008525Metagenome / Metatranscriptome332Y
F011529Metagenome / Metatranscriptome290Y
F036916Metagenome169Y
F040871Metagenome / Metatranscriptome161Y
F045369Metagenome / Metatranscriptome153N
F045374Metagenome / Metatranscriptome153Y
F076496Metagenome / Metatranscriptome118N
F080496Metagenome / Metatranscriptome115N

Sequences

Protein IDFamilyRBSSequence
Ga0211492_1000001100F080496AGGAMNIKEHNENMESIRSSYDSIMKSGYSIMGCMILWIGIEIGMML
Ga0211492_1000001101F011529GGAMWVKESKRKTIDKLDGIRLRSARLWLDKDGFHPFLDQDDLTKPDLQKSMGCAYADLPKEAWDTMDRYDEALAKGSIYAT
Ga0211492_1000001104F040871AGGAMSTTQLFEALEDNVKRMGMMGQWYQRYDISEAAEKSRRIIDELKKELDPPCGMSRK
Ga0211492_1000001107F004630GGAGMEYNNTKLMSEYYKDDGSVAKIYQVVTGMDGEHSFFSITYKDPAGNRIMQEDFPYKALQYVEDAAENWTKGIKLLKG
Ga0211492_100000114F007946GAGMSTRDLIDNIKSGDAQASNNTFNSIMHDKLIDALDNHKQEVASKMYGASDDAPAVEEPAAETEVEVTGEVEADADV
Ga0211492_100000115F008525AGGAGMLTFKESFNEVLEAKLKLGGGEKVVKQMKKLGKKKNVDAVITQQKAGSKKFNLYIDGLKLDSYKDQASAEKAVTEFIKLMGA
Ga0211492_100000126F036916N/AMDKDFPQQISELPVKFFKLVSGESIIAYTHPLDDESDGALIGIEEPMKIHIDEIDHHYVMTPWLPFSNQKLHILENFNVMLTSDVNDDVKHHYMKIILDEIQTDKEMMEEQVKIMKGNATTH
Ga0211492_100000158F045369AGGAGGVPLNLYTETFNQTDIDPKRLYARAKAESEKITWNPNNRTPEKILMDCMMGQCAELYLIDKCGYTDNPNGFMDVFDLEGREIEVKVTRGEHNIKFMLGDLLVRKIEWGYHVADIVYFYLYDPKSGDYTFCREYNFNGTDYVLSS
Ga0211492_100000192F045374GGAGMICHECNSPDFDVTVKEELGYDNNPIDLGLEVTHCPFCGANLEWAQRGGYDASEYDNDEERLDV
Ga0211492_100000199F076496AGGAGMGRSKELQDFIDANPDKFRVVSPEETAKTLQKQSGGYFKGQSVMGPSKKKGKSS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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