NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211501_1008804

Scaffold Ga0211501_1008804


Overview

Basic Information
Taxon OID3300020239 Open in IMG/M
Scaffold IDGa0211501_1008804 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000003 (ERX555909-ERR598959)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2172
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_034
CoordinatesLat. (o)18.4017Long. (o)39.855Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008747Metagenome / Metatranscriptome328Y
F032291Metagenome / Metatranscriptome180Y
F103296Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0211501_10088041F103296AGGAGLTTMVRSAVVLPPVLVAVTVYVAEDVTAVGVPEMAPVEESSDSPVGREGETDQEVTGPPLTVGVTVVIAVPLVRVNEFGL
Ga0211501_10088043F008747AGGAVMAVGVPERAPVDESRDNPAGSEGETDQVVMAPPLEVGVTVVMAVPLVSVRELGL
Ga0211501_10088044F008747GGCGGVPLMAPVELSSDKPDGSEGDTDQEVTAPPVDVGVTVVMDVPLVRVRELGL
Ga0211501_10088045F032291GAGGMAVGVPEIAPVEESNERPAGRDGETDQDVTGPPLADGVTVVMAVPFVRVKEFGVNVNEEGATSLTTMVTSAVVLPPVLLAVTV
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