NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211655_1002182

Scaffold Ga0211655_1002182


Overview

Basic Information
Taxon OID3300020243 Open in IMG/M
Scaffold IDGa0211655_1002182 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000953 (ERX556050-ERR599055)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4297
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_102
CoordinatesLat. (o)-5.2771Long. (o)-85.2995Alt. (m)Depth (m)480
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F081443Metagenome114N
F084705Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0211655_10021824F084705N/AMLSPQALFALTYVSAVPLIAFSIVAGMNNKPRAKKWYGVFGVIFFVIAVVAYIFFLIELLSY
Ga0211655_10021825F081443N/AMVVERVAKKPLDFQEKFLIGPMGRCHINNAFSLFQEQQPSFTLERFLKLWGNASPHKINQRDVIVARSSNDYIHGLYVYSATPKKKFEIEHLIIPGPIARQTILKQFIEHMIRSGLDFQCSVISIYHLNESDWRSLFLQEAGAKRVKPDCLQINLLS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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