NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211707_1000158

Scaffold Ga0211707_1000158


Overview

Basic Information
Taxon OID3300020246 Open in IMG/M
Scaffold IDGa0211707_1000158 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000424 (ERX555934-ERR599105)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11747
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (68.42%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_072
CoordinatesLat. (o)-8.7788Long. (o)-17.9098Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F074010Metagenome120N
F105369Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0211707_100015813F074010AGGAMIKFSEIKDIHPKGSIWIGENRNKNDKTLLHSQALSFHENFLDVAKDVFTEDKRFADVTEHDWMQPLFDKLMKLLEDVGFGKYYVVQADFNKATDVPSHYRMLYIPCCSPDCIDLDIQTGEKGIFKLPLKEGSFIVMPPNSGIRIIAPPGKMFLGLIMGICKDED
Ga0211707_100015817F105369AGGAGMFSFITNLFKPKPKQIKKSRLMTMTKRELETLGRKHGIELDRRYLKDDLVEQLWSHINGK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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