NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211707_1024019

Scaffold Ga0211707_1024019


Overview

Basic Information
Taxon OID3300020246 Open in IMG/M
Scaffold IDGa0211707_1024019 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000424 (ERX555934-ERR599105)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)847
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_072
CoordinatesLat. (o)-8.7788Long. (o)-17.9098Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006023Metagenome383Y
F022110Metagenome / Metatranscriptome216Y
F022222Metagenome / Metatranscriptome215Y

Sequences

Protein IDFamilyRBSSequence
Ga0211707_10240191F006023N/AMEEKKEQLRLTKSRWKLLREHIGKNIINTIQKIGLRNEAVERKLQMSEEEQIEEILEEANAYNLREEVKIAAEKIFKENDMFSRLDAYVSAYHQVIDD
Ga0211707_10240192F022110N/AMEEIQNQLEILIDDVERDGNMTNSDLILALYKLKEQIEDYNLQKEEGLQWEDLD
Ga0211707_10240193F022222AGGMKINAIIGTQINTVKAFTALAAIRLLAKEGVATEESVLAMAA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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