Scaffold Ga0211584

Basic Information
Taxon OID	3300020248 Open in IMG/M
Scaffold ID	Ga0211584_1000002 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000123 (ERX556118-ERR599141)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020248 Open in IMG/M

Scaffold ID

Ga0211584_1000002 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_B100000123 (ERX556118-ERR599141)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	52467
Total Scaffold Genes	122 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	64 (52.46%)
Novel Protein Genes	14 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (50.00%)
Associated Families	14

Scaffold Components

Scaffold Length (bps)

52467

Total Scaffold Genes

122 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

64 (52.46%)

Novel Protein Genes

14 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_042
Coordinates	Lat. (^o)	6.0124	Long. (^o)	73.8985	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_042

Coordinates

Lat. (^o)

6.0124

Long. (^o)

73.8985

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001504	Metagenome / Metatranscriptome	681	Y
F013777	Metagenome	268	Y
F024330	Metagenome	206	Y
F033839	Metagenome	176	N
F043451	Metagenome	156	N
F044550	Metagenome	154	N
F047732	Metagenome	149	N
F064809	Metagenome	128	N
F067840	Metagenome	125	N
F073669	Metagenome	120	N
F078835	Metagenome	116	N
F090511	Metagenome	108	N
F092220	Metagenome	107	N
F101313	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211584_10000021	F064809	N/A	IPSLSLGPRHDLTKNCPLYTYMEISMLTTTFTGNISFAEIVTKDGQGNNLDNPFLSIKVAVNDVNDNGLTIAVRTKNGLFEAAQNGEDLVGTRVVIAGSIELPSIRSHYVDNDGNLVALKKPQCRVYANTIERLNRKPAPATVQAELAV
Ga0211584_100000210	F013777	GAGG	MTKTFTMWGPTSIDHFKNLHDHYLKKNPIVHAYATPYHDDPADNPAAMWSFVMHEKRDLERIAFKTYIHPQGDFQNGYYDICDIEKGTFDCDNMNLGEVYPVILYAHHETMLTVGCVVKTSDHPDIHGKEQLALWIYYPSGENIESFDMASGHVYK
Ga0211584_100000215	F073669	N/A	MMIEPNMKLLEAMRDEANLCYERGDEADGNALVESIFAQIFPGLVEAAKNDPKIIYQLIIQANSSDVRLADHSKSILMYLKNKGVKF
Ga0211584_100000218	F067840	GAGG	MVKKFGKRYKQTKKAIYTAYDILSLIVILLSFDKLLNSKSRSVEPRQVARLIEKLPRIKKILYDSAPWWAFDDMDIKSK
Ga0211584_100000223	F024330	N/A	MSQNDQVPAGTENYPVNNYIPKSNPNSRPKKFTKYAYVVKNQVVWDRLHKKYVVLEGKGQPETQPIPLLHKDNRKAYEDACDVCGWSYQAKEARTLYVTDGTYISPTAIKRMRELP
Ga0211584_100000225	F101313	N/A	MGSALKREFKVGDEVCHTNKFSTGNNFRKRRQGVVLALEKRPVKGGKLRSYVKVLWNTSSVPCYHASHALLLLREREDAIEEASKLISN
Ga0211584_100000234	F044550	GGAGG	MITYIDVYVMGKKLVRAKKLYYLILDDESKYCLLKLDIASKDYVELDHDLDLFALSRLLFQQDNDSYHKIPNKKE
Ga0211584_100000239	F078835	N/A	MNKKDQLTPEEYKRVIHVLTPFTLGRRVDDQYHFRTIRAKLKRQLAALENNGWYSK
Ga0211584_10000024	F043451	N/A	MITGKCILVKIMPSIQPWLYPNNPSVDRIAYIPLQSAHILQYQEEFVDAEGNVYWKTTDTTTISGAASVKEFLEQMRDYYETCSCQKSQDYKS
Ga0211584_100000244	F047732	GGAGG	MQRGYAICTTDLARILTIAPCKTKFIFVPITSGQVLTDAICFTDISNAKTIESRAKKKFEDMPETRIVNVALLYNRIDKQNELSNL
Ga0211584_100000249	F092220	GGA	MIMEPVKAVEPITEKDEIQKFQELKEQVFKEYADYSLNKLYNFNELLITTIHQLQFKQMAMQELITHRLDNICPKETTN
Ga0211584_10000025	F033839	AGGA	MNNMSPITRAFLTVGIGVFIGILPVFMIINSLSNTAIRFCKGYGSDYTIVTVDTPFGSVKRCVAKD
Ga0211584_100000262	F001504	AGGAGG	MIYDSEHYYAVQTFLDDDELCKIWNIIEIAMNREGYDIENAELSMRLYDSELEENIEHDMEES
Ga0211584_100000266	F090511	N/A	MLSPFKRKILQRMGLNHVAYHGNKNCNEDWLNGYFQAKKDLEMQLNQIMITTDDLD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211584_1000002

Overview

Ecosystem & Geography

Associated Families

Sequences