NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211584_1000003

Scaffold Ga0211584_1000003


Overview

Basic Information
Taxon OID3300020248 Open in IMG/M
Scaffold IDGa0211584_1000003 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000123 (ERX556118-ERR599141)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36725
Total Scaffold Genes46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_042
CoordinatesLat. (o)6.0124Long. (o)73.8985Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033841Metagenome / Metatranscriptome176N
F034215Metagenome / Metatranscriptome175Y
F036741Metagenome169Y
F091884Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0211584_100000314F036741N/AMTHKEFFKIIVGNPPPEIEFEIEVKQRETEQMPEEAVRAYCLDLVKYTKLQDLLLTSAITRISDIETKLYRYEKGMKLYKKVRKLGFFGKIKYLLSGNTGEK
Ga0211584_100000337F034215GGAGGMPTKKSSRKRDEDGKFVSEKAIVSELGVNEENPVPEKSGDVITRHGSTIHYS
Ga0211584_100000345F033841AGGMEALKPETIKIVTPNPTNFRYSYLVTPDEFKGVKKYKAECLIKKGTMMKLEKGREVDAVEHIIEQLEGLLDRWKAALKEYYPDRKFTLTKNKHGEPALPWSTEDDYLVIKTSKKAGGVKMNGDLWTNPPVTFWANEDPLRLMTDEEKKEYEKISPMTEGQMSMKCSGYDAGANGVGIRCQPLQVIVRKHVEWTGSPDFEAEAPSSYEEKPHQIEVTGPTKETFGYEPVTTRKAGFETVDAADF
Ga0211584_10000038F091884N/AMVKTKTKKSAKKVEYPQQEKEVIAFLLVSHGSWVWSIGKDPSIVHATRCVRKAKRDYGIKGWQVIKVNIYDMSDCNTWAFDGYTLVDADKQNKESEAYKKGDIYNPYRGCERLKFIETLEVVS
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