NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211584_1010470

Scaffold Ga0211584_1010470


Overview

Basic Information
Taxon OID3300020248 Open in IMG/M
Scaffold IDGa0211584_1010470 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000123 (ERX556118-ERR599141)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1355
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_042
CoordinatesLat. (o)6.0124Long. (o)73.8985Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001479Metagenome / Metatranscriptome687Y
F003869Metagenome / Metatranscriptome464Y
F030123Metagenome / Metatranscriptome186N

Sequences

Protein IDFamilyRBSSequence
Ga0211584_10104701F030123GAGGMSAISTDGMDKWLDDAYPDLDRRKANMIYEIASLIKDDPDSAPVLVEELVDIMFDEQIDHIEDVIVNHFGVEVYPE
Ga0211584_10104702F003869AGGAMAKRQYNRTHYYSIASMMTDEEVHQVWEIVGNALDRNGFTDADGELSIRVYDETLKKNVTNVIDKSLEVN
Ga0211584_10104706F001479N/AVYDAWLIKNKLPHRCASEILYGADTKGRLTQNQSYWLESFISTWDVIAQNT
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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