NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211635_1005984

Scaffold Ga0211635_1005984


Overview

Basic Information
Taxon OID3300020249 Open in IMG/M
Scaffold IDGa0211635_1005984 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000482 (ERX556038-ERR599056)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2357
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_068
CoordinatesLat. (o)-31.0136Long. (o)4.6932Alt. (m)Depth (m)50
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F056672Metagenome / Metatranscriptome137N
F069327Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0211635_10059844F056672AGGAGMKAQEYNLTGNEKFSVWFTTMMMMTSAQLDPDSKARIMNMAKIMCVGECLDMQKLENGDPAEMEKSKEKQKEFEMMKDAIWKEMDKIQEVLTACYGEPRKGNKHHRCRHND
Ga0211635_10059846F069327GAGGMGRWDEREKAFDKAFDGDTPEEIMDDFEVAKWQVSSYRYKKEHFLIGLDLISEGKRIDERLDFWESTLEILCRKNYQLLKSKGKDVDEIMDFFSEKTKEKLK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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