NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211627_1001849

Scaffold Ga0211627_1001849


Overview

Basic Information
Taxon OID3300020250 Open in IMG/M
Scaffold IDGa0211627_1001849 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000475 (ERX555986-ERR599129)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4423
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_068
CoordinatesLat. (o)-31.0263Long. (o)4.6977Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004325Metagenome / Metatranscriptome443Y
F027869Metagenome193Y
F072439Metagenome121N

Sequences

Protein IDFamilyRBSSequence
Ga0211627_10018492F004325N/AMKHKKKASTSDKADSFLNMIGTAGGPIGAPQLVGFGGTDTMSQLAAGNRDEYANIRMKEGDTRVVEGAKMPSDLDASYLKLNLPGSPLPANGLLAPQNLRAAEQTQDVIRSQEQMFLAKFIPAAGLMQLPVGQPPLESKKGKK
Ga0211627_10018493F027869N/AMEHAKAKKAKGKAEKALTQMMMEAEMAKASEADLQPEDGYINPMGRIGVVRPTTYSLTNQLDGTTTQSVINPET
Ga0211627_10018498F072439N/AMVLPSTKLGYTLGIKRDRDIISPRERQKASPFKGRRRTRMAGEKRVDLFSVRPDEAPFSYTKGTNLPKRFTQTLDIPIEREE
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